Issues after performing bench migrate

Dear Community,

I realised that after running bench migrate, I always encounter the following issues.

  1. Some standard DocType Naming Series disappears (Property Setter values disappears)
  2. Custom workflow is enabled even after disabled
  3. Custom scripts appears even after removed from textbox (I cut and paste into comments to keep track of custom scripts)

Is there anything that I should do before running bench migrate?

Thanks!

your customizations gets replaced with the .json files from your custom app (if you have any)

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