Symlink app to app-directory

I tried setting up a development environment with vagrant. I want to be able to edit my files in PyCharm.
First I setup vagrant synced folders to /home/frappe/frappe-bench/apps/my-app but before I was installing anything frappe-related so at running it didn’t create any files in the bench because it thought the bench already exists.

So I changed the folder target on the guest machine to /home/vagrant/my-app and symlinked after the installation to the apps folder. I never did bench get-app. I already have the files in my PycharmProjects folder. I ran bench install-app my-app but it returned an error with no module named my-app.

So is there a way to tell frappe that the app is already installed?

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